What are the main factors that influence a Bioinformatics Programmer/Analyst II's salary?

The primary factors are: 1) Experience Level, 2) Geographic Location, 3) Education/Skills, 4) Company Size & Industry

How does experience change A Bioinformatics Programmer/Analyst 's salary?

A Bioinformatics Programmer/Analyst 's salary grows with experience: a Bioinformatics Programmer/Analyst I (0-2 years)earns $72,198, a Bioinformatics Programmer/Analyst II (2-4 years)earns $98,005, a Bioinformatics Programmer/Analyst III (4-7 years)earns $107,717, a Bioinformatics Programmer/Analyst IV (7+ years)earns $134,807,

What are the highest paying states for a Bioinformatics Programmer/Analyst II?

Bioinformatics Programmer/Analyst II salary varies significantly by state. The top 3 highest paying states for Bioinformatics Programmer/Analyst II roles are District of Columbia $108,600, California $108,100, Massachusetts $106,700. These tech hubs typically pay 10-15% above the national average.

How much do different types of Bioinformatics Programmer/Analyst roles make?

Salaries for Bioinformatics Programmer/Analyst level roles vary by specialization: Director Of Bioinformatics: $151,082; Bioinformatics Engineer: $127,600; Bioinformatics Specialist: $126,760; Bioinformatics Scientist: $116,242; Bioinformatics Developer: $111,412.

How do different companies affect a Bioinformatics Programmer/Analyst II's salary?

Company size, industry, and compensation structure create significant salary variations for Bioinformatics Programmer/Analyst II roles. Large, established industry leaders like C R Bard Inc ($128,509) and Henry Schein Canada ($124,697) offer base salaries 35-40% above the national average. In contrast, smaller firms or startups may offer closer to $82,041.

Bioinformatics Programmer/Analyst II Salary in the United States

How much does a Bioinformatics Programmer/Analyst II make in the United States?

As of September 01, 2026, the average salary for a Bioinformatics Programmer/Analyst II in the United States is $98,100 per year, which breaks down to an hourly rate of $47.

However, a Bioinformatics Programmer/Analyst II's salary can vary significantly. Here’s a look at the typical salary range:

Top Earners (90th percentile): $113,575
Majority Range (25th-75th percentile): $88,900 to $106,200
Entry-Level (10th percentile): $80,524

10% $80,524

50% (Median) $98,100

90% $113,575

Bioinformatics Programmer/Analyst II Salaries by Percentile

	Annual Salary	Monthly Pay	Weekly Pay	Hourly Wage
75th Percentile	$106,200	$8,850	$2,042	$51
Average	$98,100	$8,175	$1,887	$47
25th Percentile	$88,900	$7,408	$1,710	$43

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Key Factors That Influence Bioinformatics Programmer/Analyst II Salaries

A Bioinformatics Programmer/Analyst II's salary isn't a fixed number. It's shaped by several important factors. Below, we'll explore how geographic location, education and company size can directly affect your earning potential.

How Do Bioinformatics Programmer/Analyst II Salaries Vary from State to State?

Your salary can change significantly depending on where you work. States with a higher cost of living and strong industrial sectors often pay more to attract Bioinformatics Programmer/Analyst IIs. For example, consider the average annual salaries in these key locations:

District of Columbia: $108,600.
California: $108,100.
Massachusetts: $106,700.

District of Columbia $108,600

California $108,100

Massachusetts $106,700

Washington $106,300

New Jersey $106,300

Alaska $106,100

Connecticut $104,800

New York $104,200

Hawaii $102,500

Rhode Island $101,700

Maryland $101,100

Minnesota $100,300

Colorado $100,000

Illinois $99,900

Oregon $99,600

Delaware $99,300

New Hampshire $99,100

Virginia $98,700

Pennsylvania $97,600

Nevada $97,000

North Dakota $96,900

Michigan $96,600

Wisconsin $96,500

Vermont $96,200

Maine $95,600

Texas $95,600

Arizona $95,500

Ohio $95,500

Georgia $94,600

Indiana $94,100

Wyoming $94,000

Utah $93,900

Iowa $93,800

Kansas $93,400

Missouri $93,200

Louisiana $93,200

North Carolina $93,200

Florida $92,800

Montana $92,600

Nebraska $92,400

Kentucky $92,300

South Carolina $91,900

Tennessee $91,600

Idaho $91,500

New Mexico $90,800

Oklahoma $90,700

Alabama $90,100

South Dakota $89,100

Arkansas $88,600

West Virginia $88,300

Mississippi $87,500

Top Paying Cities for Bioinformatics Programmer/Analyst IIs

Salaries can also vary between different cities. Major metropolitan areas or cities with a high demand for technicians often offer more competitive pay. Here are a few examples of average annual salaries in different U.S. cities:

San Jose: $123,700
San Francisco: $122,300
Oakland: $119,700

San Jose, CA $123,700

San Francisco, CA $122,300

Oakland, CA $119,700

New York, NY $112,900

Paramus, NJ $111,500

Queens Village, NY $111,500

Passaic, NJ $111,400

Bergenfield, NJ $111,400

Huntington, NY $111,200

Stamford, CT $111,200

Newark, NJ $110,400

Bridgeport, CT $110,200

Vallejo, CA $110,000

New Brunswick, NJ $110,000

Petaluma, CA $109,900

Middlesex, NJ $109,700

Somerset, NJ $109,700

Santa Cruz, CA $109,600

Boston, MA $109,000

Monterey, CA $108,600

Seattle, WA $108,400

Santa Rosa, CA $108,400

Los Angeles, CA $108,300

Juneau, AK $108,100

Washington, DC $108,000

Orange, CA $107,600

Santa Ana, CA $107,400

Long Beach, CA $107,300

Anchorage, AK $107,200

Anaheim, CA $107,200

Santa Maria, CA $106,900

Everett, WA $106,900

Danbury, CT $106,500

Bremerton, WA $106,400

Tacoma, WA $106,100

New Suffolk, NY $106,100

Sacramento, CA $106,000

Santa Barbara, CA $105,900

Trenton, NJ $105,800

San Diego, CA $105,800

Brockton, MA $105,700

Fairbanks, AK $105,500

Lompoc, CA $105,200

Lowell, MA $105,100

Ventura, CA $105,100

Nashua, NH $105,100

Stockton, CA $105,100

Modesto, CA $104,400

Poughkeepsie, NY $104,200

Kennewick, WA $104,000

Olympia, WA $104,000

New Haven, CT $103,900

Lawrence, MA $103,600

Hartford, CT $103,500

Riverside, CA $103,500

New Bedford, MA $103,400

Richland, WA $103,400

Atlantic City, NJ $103,200

New Britain, CT $103,200

San Bernardino, CA $103,200

Bakersfield, CA $103,200

New London, CT $103,100

Norwich, CT $103,100

Portsmouth, NH $103,100

Boulder, CO $102,900

Portland, OR $102,700

Worcester, MA $102,700

Minneapolis, MN $102,400

Philadelphia, PA $102,300

Honolulu, HI $102,000

Saint Paul, MN $101,900

Vineland, NJ $101,900

Providence, RI $101,600

Chicago, IL $101,300

Bellingham, WA $101,200

Springfield, MA $101,100

Baltimore, MD $101,100

Chico, CA $100,900

Pittsfield, MA $100,600

Manchester, NH $100,400

Spokane, WA $100,000

Denver, CO $100,000

Albany, NY $99,500

Troy, NY $99,500

Nassau, NY $99,400

Schenectady, NY $99,300

Wilmington, DE $99,200

Salem, OR $99,000

Burlington, VT $99,000

Portland, ME $98,700

Yakima, WA $98,600

Rochester, MN $98,300

Reno, NV $98,300

Fresno, CA $98,300

Milwaukee, WI $98,200

Detroit, MI $98,100

Allentown, PA $98,000

Ann Arbor, MI $98,000

Colorado Springs, CO $97,900

Syracuse, NY $97,800

Carson City, NV $97,800

Houston, TX $97,700

Eugene, OR $97,600

Gary, IN $97,500

Bismarck, ND $97,400

Springfield, OR $97,400

Galveston, TX $97,300

Medford, OR $97,200

Fort Collins, CO $97,200

Concord, NH $97,100

Austin, TX $97,100

Mesa, AZ $96,900

Reading, PA $96,900

Phoenix, AZ $96,900

Dallas, TX $96,800

Saint Cloud, MN $96,700

Madison, WI $96,600

Utica, NY $96,300

Rochester, NY $96,200

Des Moines, IA $96,200

Raleigh, NC $96,200

Atlanta, GA $96,000

Battle Creek, MI $96,000

Salt Lake City, UT $96,000

Lancaster, PA $95,800

Harrisburg, PA $95,700

Champaign, IL $95,600

Kansas City, MO $95,600

Kansas City, KS $95,600

Fort Worth, TX $95,500

Columbus, OH $95,500

Boca Raton, FL $95,500

Pittsburgh, PA $95,500

Indianapolis, IN $95,400

Richmond, VA $95,400

Cleveland, OH $95,400

Cincinnati, OH $95,300

Las Vegas, NV $95,300

Petersburg, VA $95,100

Huntsville, AL $95,000

Lansing, MI $94,900

Lebanon, PA $94,900

Pueblo, CO $94,900

Appleton, WI $94,900

Racine, WI $94,800

Buffalo, NY $94,800

Dayton, OH $94,800

Charlotte, NC $94,800

Saint Louis, MO $94,700

York, PA $94,700

Elkhart, IN $94,700

Gastonia, NC $94,700

Lorain, OH $94,600

Benton Harbor, MI $94,600

Billings, MT $94,600

Beaumont, TX $94,600

Toledo, OH $94,600

Rock Hill, SC $94,500

Binghamton, NY $94,500

Rockford, IL $94,400

Springfield, IL $94,400

Elyria, OH $94,400

Fargo, ND $94,400

Flagstaff, AZ $94,300

Fort Lauderdale, FL $94,300

Duluth, MN $94,200

Miami, FL $94,200

Cheyenne, WY $94,100

Grand Forks, ND $94,100

Bangor, ME $93,900

Cedar Rapids, IA $93,800

Durham, NC $93,800

Louisville, KY $93,800

Grand Rapids, MI $93,800

Hialeah, FL $93,700

Casper, WY $93,600

New Orleans, LA $93,500

Scranton, PA $93,500

Virginia Beach, VA $93,400

Akron, OH $93,400

Peoria, IL $93,300

Sarasota, FL $93,300

Nashville, TN $93,200

Omaha, NE $93,200

Green Bay, WI $93,200

Jamestown, NY $93,100

Davenport, IA $93,100

Charleston, SC $93,100

Baton Rouge, LA $93,100

Tucson, AZ $93,000

Saint Petersburg, FL $93,000

Tampa, FL $92,900

Evansville, IN $92,900

Port Arthur, TX $92,900

Bradenton, FL $92,800

Santa Fe, NM $92,700

Clearwater, FL $92,500

Orlando, FL $92,500

La Crosse, WI $92,300

Canton, OH $92,300

Albuquerque, NM $92,200

Newport News, VA $92,200

High Point, NC $92,200

Ogden, UT $92,100

Laramie, WY $92,000

Corpus Christi, TX $92,000

Norfolk, VA $92,000

Rock Island, IL $91,900

Saginaw, MI $91,900

Jacksonville, FL $91,900

Salisbury, NC $91,900

Boise, ID $91,900

Fort Myers, FL $91,800

Memphis, TN $91,800

Moline, IL $91,800

Tulsa, OK $91,700

Waterloo, IA $91,600

Spartanburg, SC $91,500

Lincoln, NE $91,500

Fort Wayne, IN $91,500

Provo, UT $91,500

Cedar Falls, IA $91,400

San Antonio, TX $91,300

Greensboro, NC $91,300

South Bend, IN $91,300

Savannah, GA $91,200

Muskegon, MI $91,100

Birmingham, AL $91,100

Winston Salem, NC $91,100

Lake Charles, LA $90,800

Anderson, IN $90,800

Lexington, KY $90,800

Lima, OH $90,700

Wichita, KS $90,700

Augusta, GA $90,700

Greenville, SC $90,700

Tuscaloosa, AL $90,700

Columbia, SC $90,600

Springfield, OH $90,500

Asheville, NC $90,400

Bloomington, IN $90,300

Knoxville, TN $90,000

Shreveport, LA $90,000

Wilmington, NC $89,800

Roanoke, VA $89,800

Topeka, KS $89,700

Oklahoma City, OK $89,600

Frankfort, KY $89,600

Chillicothe, OH $89,500

Longview, TX $89,500

Melbourne, FL $89,500

Sioux Falls, SD $89,400

Mobile, AL $89,400

Terre Haute, IN $89,300

Altoona, PA $89,300

Killeen, TX $89,200

Amarillo, TX $89,200

Fayetteville, AR $89,100

Chattanooga, TN $89,000

Sioux City, IA $89,000

Idaho Falls, ID $88,900

Lynchburg, VA $88,900

Little Rock, AR $88,700

Gainesville, FL $88,700

Portsmouth, OH $88,700

Clarksville, TN $88,600

Daytona Beach, FL $88,600

Lafayette, LA $88,600

Youngstown, OH $88,600

Pensacola, FL $88,500

Temple, TX $88,500

Hopkinsville, KY $88,300

Erie, PA $88,200

Florence, SC $88,200

Charleston, WV $88,000

Great Falls, MT $88,000

Macon, GA $87,900

Tallahassee, FL $87,800

Fayetteville, NC $87,800

Waco, TX $87,800

Helena, MT $87,700

Pine Bluff, AR $87,700

Vincennes, IN $87,600

Lubbock, TX $87,500

Alamogordo, NM $87,500

Rapid City, SD $87,400

Twin Falls, ID $87,400

Jackson, MS $87,200

Huntington, WV $87,200

Greenville, MS $87,200

Parkersburg, WV $87,100

Montgomery, AL $87,100

Wichita Falls, TX $87,000

Springfield, MO $87,000

Biloxi, MS $86,900

Monroe, LA $86,800

Columbus, GA $86,700

Johnstown, PA $86,700

Sumter, SC $86,700

Pascagoula, MS $86,500

Abilene, TX $86,500

Kingsport, TN $86,300

Albany, GA $86,300

Gulfport, MS $86,200

Alexandria, LA $85,900

Fort Smith, AR $85,700

El Paso, TX $85,400

Las Cruces, NM $85,000

Harlingen, TX $84,700

Pocatello, ID $84,700

Florence, AL $84,600

Brownsville, TX $84,500

Mcallen, TX $84,300

Dothan, AL $84,200

Columbus, MS $83,600

Altus, OK $83,200

Lawton, OK $83,000

Pierre, SD $82,600

What Skills Can Increase a Bioinformatics Programmer/Analyst II's Salary?

Demanded Skills for the Role:

Team Management (Mentioned in 3.17% Job Postings): The ability of an individual or an organization to administer and coordinate a group of individuals to perform a task. Team management involves teamwork, communication, objective setting and performance appraisals.
Clinical Research (Mentioned in 2.7% Job Postings): Clinical research is a branch of healthcare science that determines the safety and effectiveness (efficacy) of medications, devices, diagnostic products and treatment regimens intended for human use. These may be used for prevention, treatment, diagnosis or for relieving symptoms of a disease. Clinical research is different from clinical practice. In clinical practice established treatments are used, while in clinical research evidence is collected to establish a treatment.
SOP (Mentioned in 2.22% Job Postings): SOP is A standard operating procedure is a set of step-by-step instructions compiled by an organization to help workers carry out routine operations.

Skills	Demand Percentage
Team Management	3.17%
Clinical Research	2.7%
SOP	2.22%

See More Skills

What skills can make your compensation higher?

Mastering certain specialized skills can lead to a significant increase in pay. Here are examples of skills and the potential impact they can have on a Bioinformatics Programmer/Analyst II's salary.

UAT: Can increase your salary by up to 21%.
SOP: Can increase your salary by up to 11%.
Clinical Trial: Can increase your salary by up to 10%.

Skill	Salary	Salary % Increase
UAT	$118,701	21%
SOP	$108,891	11%
Clinical Trial	$107,910	10%

Get Latest Data

Bioinformatics Programmer/Analyst II Salary by Company Size: Startups vs. Enterprise

Bioinformatics Programmer/Analyst II salary potential scales significantly with company size. Data shows that Enterprise companies (5,000+ employees) pay the highest average salary at around $110,120. While startup companies pay approximate $93,441.

Bioinformatics Programmer/Analyst II Salary by Company Size

Company Size	Employees	Average Salary
Startup	1~50	$93,441
Growth Stage	51~500	$98,744
Established	501~5000	$106,410
Enterprise	5000+	$110,120

Bioinformatics Programmer/Analyst II Salary by Industry: Top Paying Sectors

For Bioinformatics Programmer/Analyst II roles, the industry you choose can affect earning potential by as much as 50% (the gap between the highest and lowest paying industries). Data shows that the Biotechnology and Healthcare sectors offer the strongest compensation, at 25% above the average. In contrast, Bioinformatics Programmer/Analyst positions in Edu., Gov't. & Nonprofit or MFG Nondurable typically offer lower base pay, as these industries often view Bioinformatics Programmer/Analyst II as a support function rather than a direct revenue driver.

The top paying industries for a Bioinformatics Programmer/Analyst II

Industry Sector	Average Annual Salary	Average Hourly Rate	Pay vs.Avg
Biotechnology	$122,625	$59.0	25%
Healthcare	$112,815	$54.0	15%

How Education impacts a Bioinformatics Programmer/Analyst II's Salary?

Your level of education can impact your salary potential. While many Bioinformatics Programmer/Analyst IIs enter the field with a Associate's Degree degree, higher education can lead to more specialized and higher-paying roles.

According to our 100% employer-reported salary data, the median salary for a Bioinformatics Programmer/Analyst II with a Associate's Degree is between $83,884 and $88,906).

Bioinformatics Programmer/Analyst II Salaries by Degree Level

$90,800
$89,800
$88,900
$87,900
$86,900
$85,900
$84,900
$83,900

Typical Education for Bioinformatics Programmer/Analyst II
Degree Level	% of user with this level of education
No Diploma	2.9%
High School	31.4%
Associates	2.9%
Bachelors	31.4%
Masters	60.0%
Doctorate	5.7%

View as Graph

Bioinformatics Programmer/Analyst II Salary: Hourly Rate, Weekly Pay, and Monthly Pay

Understanding how a Bioinformatics Programmer/Analyst II's annual salary breaks down can help with budgeting. Below, you can see the average hourly rate, weekly pay, and monthly pay for this role. Use the buttons to switch between different pay periods.

$88,900

Average $98,100/year

$106,200

$7,408

Average $8,175/month

$8,850

$1,710

Average $1,887/week

$2,042

$43

Average $47/hour

$51

	Annual Salary	Monthly Pay	Weekly Pay	Hourly Wage
75th Percentile	$106,200	$8,850	$2,042	$51
Average	$98,100	$8,175	$1,887	$47
25th Percentile	$88,900	$7,408	$1,710	$43

Bioinformatics Programmer/Analyst II Salary Growth & Career Path

Bioinformatics Programmer/Analyst II

Next Role

Advancement

Promotions are the fastest way to increase your earnings. As a Bioinformatics Programmer/Analyst II, you have the following paths for advancement. The table below compares the salary raises for common next-step roles. By comparing these figures, you can choose the career path that best meets your financial goals.

Bioinformatics Programmer/Analyst II Salary Growth and Career Path
Next Step Role	Estimate Salary	Projected Raise
Cerner Certified Application Analyst Senior	$120,600	23%
Bioinformatics Programmer/Analyst III	$107,800	10%

Salary Trends for Bioinformatics Programmer/Analyst II

Salaries for a Bioinformatics Programmer/Analyst II can change over time, reflecting shifts in market demand and the overall economy. The median salary decreased from $86,047 in 2023 to around $85,658 in 2025, reflecting changes in demand, location, experience, and the wider economy. For a detailed analysis of Bioinformatics Programmer/Analyst II salary trends, .

Average Annual Salary of Bioinformatics Programmer/Analyst II Over Time

$???
$86,047
$86,257
$85,658
$???
$???

2022
2023
2024
2025
2026
2027

Year	Average Annual Salary
2022	View More
2023	$86,047
2024	$86,257
2025	$85,658
2026	View More
2027	View More

Most common benefits for Bioinformatics Programmer/Analyst II

Social Security
401 (k)
Disability
Healthcare
Pension
Time Off (days)

Common company salaries for Bioinformatics Programmer/Analyst II

Here are companies hiring for Bioinformatics Programmer/Analyst II and their salaries, click below for more details.

C $128,509/per year

C R Bard Inc Biotechnology the United States

H $124,697/per year

Henry Schein Canada Biotechnology the United States

N $123,899/per year

Nordex Inc Biotechnology the United States

N $120,416/per year

Nipro Corp Biotechnology the United States

E $115,870/per year

Enovis Biotechnology the United States

A $114,553/per year

Advanced Research Projects Agency - Energy Biotechnology the United States

M $112,110/per year

MiniMed Inc Biotechnology the United States

L $111,500/per year

Labcorp Drug Development Biotechnology the United States

L $110,229/per year

Life Technologies Corp Biotechnology the United States

Z $106,224/per year

Zimmer Biomet Biotechnology the United States

P $103,077/per year

Promontory Therapeutics Biotechnology the United States

S $102,181/per year

Steris PLC Biotechnology the United States

G $97,274/per year

Gavin Conferences Pty Ltd Biotechnology the United States

E $94,764/per year

Endeavor BioMedicines Biotechnology the United States

R $94,402/per year

Replay Holdings LLC Biotechnology the United States

P $94,235/per year

Pleno Inc Biotechnology the United States

S $93,666/per year

Simulaids Inc Biotechnology the United States

N $88,880/per year

NOIRLab/CAS Biotechnology the United States

O $86,468/per year

Onward Technology Biotechnology the United States

L $84,895/per year

LED Medical Diagnostics Inc Biotechnology the United States

E $84,682/per year

Eyeco Ltd Biotechnology the United States

P $84,523/per year

Paerosol Biotechnology the United States

I $83,525/per year

IONIQ Sciences Inc Biotechnology the United States

S $82,815/per year

Stateside PPE Biotechnology the United States

D $82,041/per year

Digi Bio Biotechnology the United States

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FAQ about Bioinformatics Programmer/Analyst II

1. What industry pays the highest salary for Bioinformatics Programmer/Analyst II?

The Biotechnology industry offers the highest average compensation for Bioinformatics Programmer/Analyst II roles, with salaries approximately 25% above the market median.

2. Is bioinformatics stressful?

Bioinformatics can be a demanding field, often requiring attention to detail and problem-solving skills. The stress level may vary based on project deadlines and complexity. However, with a salary range of $80,100 to $101,000, many find the financial rewards worth the challenges, making it a fulfilling career for those passionate about the intersection of biology and technology.

3. What does a bioinformatics analyst do?

A bioinformatics analyst utilizes computational tools and techniques to analyze biological data, often focusing on genomic and proteomic information. They develop algorithms, manage databases, and interpret complex datasets to support research in areas like genetics and drug development. The salary for this role typically ranges from $80,100 to $101,000, with a median of $88,400.

4. Is bioinformatics in demand in USA?

Bioinformatics is indeed in demand in the USA. While the U.S. Bureau of Labor Statistics doesn't track bioinformatics separately, jobs in computer-based analysis are projected to grow by 22% by 2030, significantly above the national average. Salaries for Bioinformatics Programmers/Analysts range from $80,100 to $101,000, with a median of $88,400, reflecting the field's growing importance.

5. How much does a bioinformatics analyst make in the US?

The salary for a Bioinformatics Programmer/Analyst in the US ranges from $80,100 to $101,000, with a mid-salary of $88,400. These figures reflect the typical earnings in the field, providing a clear picture of the compensation landscape for this role.

6. What is the highest paying bioinformatics company?

The salary range for Bioinformatics Programmers/Analysts typically falls between $80,100 and $101,000, with a mid-salary of $88,400. While some top-paying companies like IDbyDNA and Gritstone Bio offer salaries significantly higher, the average compensation in the field remains within this range, reflecting the demand for skilled professionals in bioinformatics.

7. How much does Pfizer bioinformatics pay?

Pfizer offers competitive salaries for Bioinformatics Programmers/Analysts, with a minimum salary of $80,100, a mid-range salary of $88,400, and a maximum salary of $101,000 per year. Additional compensation may vary based on performance and other factors.

Where Does Our Salary Data Come From?

Salary.com provides salary estimates, histograms, trends, and comparisons using data from employer job postings and third-party sources.

We offer detailed salary information across multiple percentiles for your reference. (Click here to learn Why the Salary Midpoint Formula Is Crucial for Achieving Pay Equity.)

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