As of June 01, 2026, the average annual salary for Applications Scientist in Boston, MA is $90,623, equivalent to $44 per hour, $1,743 weekly, or $7,552 monthly. These figures, sourced from Salary.com’s real-time job posting scans, highlight competitive earning potential for Applications Scientist in cities like San Jose, Santa Clara, and San Francisco.
Annually Salaries for Applications Scientist in Boston, MA vary widely, spanning from $73,886 to $104,556. Most professionals fall between the 25th percentile ($81,862) and 75th percentile ($97,916), while top earners (90th percentile) make $104,556 per year. This $16,054 pay gap underscores opportunities for salary growth through certifications, specialized skills like Analysis or Application Development, or targeting high-paying regions like District of Columbia or California.
Location and experience significantly influence earnings. For example, Boston Applications Scientist often earn 2.1% higher than national averages. However, Boston currently ranks 56 statewide for Applications Scientist job salary. Professionals are advised to focus on high-growth sectors like to offset market challenges.
