As of August 01, 2026, the average annual salary for Program Associate in San Diego, CA is $52,563, equivalent to $25 per hour, $1,011 weekly, or $4,380 monthly. These figures, sourced from Salary.com’s real-time job posting scans, highlight competitive earning potential for Program Associate in cities like San Jose, Santa Clara, and San Francisco.

Annually Salaries for Program Associate in San Diego, CA vary widely, spanning from $39,223 to $63,564. Most professionals fall between the 25th percentile ($45,581) and 75th percentile ($58,321), while top earners (90th percentile) make $63,564 per year. This $12,740 pay gap underscores opportunities for salary growth through certifications, specialized skills like Planning or Programming, or targeting high-paying regions like District of Columbia or California.

Location and experience significantly influence earnings. For example, San Diego Program Associate often earn 2.2% higher than national averages. However, San Diego currently ranks 128 statewide for Program Associate job salary. Professionals are advised to focus on high-growth sectors like to offset market challenges.

Based on HR-reported data: a national average with a geographic differential
Program Associate Salaries by Percentile
Percentile Salary Location Last Updated
10th Percentile Program Associate Salary $39,223 San Diego, CA August 01, 2026
25th Percentile Program Associate Salary $45,581 San Diego, CA August 01, 2026
50th Percentile Program Associate Salary $52,563 San Diego, CA August 01, 2026
75th Percentile Program Associate Salary $58,321 San Diego, CA August 01, 2026
90th Percentile Program Associate Salary $63,564 San Diego, CA August 01, 2026
25% $45,581 10% $39,223 90% $63,564 75% $58,321 $52,563 50%(Median) Didn’t find job title? Click
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Check out Program Associate jobs in San Diego, California

Program Associate

Brilliant Corners - San Diego, CA

Program Production Associate

Museum of Contemporary Art San Diego - San Diego, CA

Associate Director, FHCSD Psychiatry Residency Program

Family Health Centers of San Diego - San Diego, CA

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Program Associate

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Job Openings for Program Associate in San Diego, CA

Career Path for this job

  1. This Job:

    Program Associate

    0 - 2 years experience
    Bachelor's Degree

  2. Up a level:

    Non-Profit Program Coordinator

    2 - 4 years experience
    Bachelor's Degree

Understand the total compensation opportunity for a Program Associate, base salary plus other pay elements

Average Base Salary

Core compensation

 
 
 
45581
58321
52563

Average Total Cash Compensation

Includes base and annual incentives

 
 
 
54285
70182
60796
These charts show the average base salary (core compensation), as well as the average total cash compensation for the job of Program Associate in San Diego, CA. The base salary for Program Associate ranges from $45,581 to $58,321 with the average base salary of $52,563. The total cash compensation, which includes base, and annual incentives, can vary anywhere from $54,285 to $70,182 with the average total cash compensation of $60,796.

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45581
58321

 

About San Diego, California    According to SDSU professor emeritus Monte Marshall, San Diego Bay is "the surface expression of a north-south-trending, nested graben". The Rose Cany....More

San Diego, California  area prices were up 2.6% from a year ago

Program Associate Salary in popular cities: Los AngelesSan JoseSan Francisco

Skills associated with Program Associate: Regulatory Compliance, Attend, Track

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