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Intermediate Clinical Programmer Salary in the United States

How much does an Intermediate Clinical Programmer make in the United States?

As of July 01, 2026, the average salary for an Intermediate Clinical Programmer in the United States is $97,993 per year, which breaks down to an hourly rate of $47.

However, an Intermediate Clinical Programmer's salary can vary significantly. Here’s a look at the typical salary range:

  • Top Earners (90th percentile): $113,620
  • Majority Range (25th-75th percentile): $88,843 to $106,173
  • Entry-Level (10th percentile): $80,512
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View as table View as graph 25% $88,843 10% $80,512 90% $113,620 75% $106,173 $97,993 50%(Median) Didn’t find job title? Click

Intermediate Clinical Programmer Salaries by Percentile

Annual
Salary		 Monthly
Pay		 Weekly
Pay		 Hourly
Wage
75th Percentile $106,173 $8,848 $2,042 $51
Average $97,993 $8,166 $1,884 $47
25th Percentile $88,843 $7,404 $1,709 $43
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Key Factors That Influence Intermediate Clinical Programmer Salaries

An Intermediate Clinical Programmer's salary isn't a fixed number. It's shaped by several important factors. Below, we'll explore how your years of experience, geographic location, education, and company size can directly affect your earning potential.

How Experience Level Affects Intermediate Clinical Programmer Salaries?

Experience is a primary driver of an Intermediate Clinical Programmer's salary. As you build your skills and take on more complex tasks, your compensation generally increases. Here's how the average salary grows at different career stages:

  • Bioinformatics Programmer/Analyst I (0-2 years): $72,184
  • Intermediate Clinical Programmer (2-4 years): $97,974
  • Bioinformatics Programmer/Analyst III (4-7 years): $107,701
  • Bioinformatics Programmer/Analyst IV (7+ years): $134,777
Job Role Years of Experience Average Salary
Bioinformatics Programmer/Analyst I0-2 years$72,184
Intermediate Clinical Programmer2-4 years$97,974
Bioinformatics Programmer/Analyst III4-7 years$107,701
Bioinformatics Programmer/Analyst IV7+ years$134,777
$72,184 Bioinform...
$97,974 Intermedi...
$107,701 Bioinform...
$134,777 Bioinform...
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What Am I Worth?

How Do Intermediate Clinical Programmer Salaries Vary from State to State?

Your salary can change significantly depending on where you work. States with a higher cost of living and strong industrial sectors often pay more to attract Intermediate Clinical Programmers. For example, consider the average annual salaries in these key locations:

  • District of Columbia: $108,493.
  • California: $108,083.
  • Massachusetts: $106,643.

Top Paying Cities for Intermediate Clinical Programmers

Salaries can also vary between different cities. Major metropolitan areas or cities with a high demand for technicians often offer more competitive pay. Here are a few examples of average annual salaries in different U.S. cities:

  • San Jose: $123,593
  • San Francisco: $122,243
  • Oakland: $119,663

What Skills Can Increase an Intermediate Clinical Programmer's Salary?

Demanded Skills for the Role:

  • Team Management (Mentioned in 3.17% Job Postings): The ability of an individual or an organization to administer and coordinate a group of individuals to perform a task. Team management involves teamwork, communication, objective setting and performance appraisals.
  • Clinical Research (Mentioned in 2.7% Job Postings): Clinical research is a branch of healthcare science that determines the safety and effectiveness (efficacy) of medications, devices, diagnostic products and treatment regimens intended for human use. These may be used for prevention, treatment, diagnosis or for relieving symptoms of a disease. Clinical research is different from clinical practice. In clinical practice established treatments are used, while in clinical research evidence is collected to establish a treatment.
  • SOP (Mentioned in 2.22% Job Postings): SOP is A standard operating procedure is a set of step-by-step instructions compiled by an organization to help workers carry out routine operations.
See More Skills
Skills Demand Percentage
Team Management 3.17%
Clinical Research 2.7%
SOP 2.22%
What skills can make your compensation higher?
Mastering certain specialized skills can lead to a significant increase in pay. Here are examples of skills and the potential impact they can have on an Intermediate Clinical Programmer's salary.
  • UAT: Can increase your salary by up to 21%.
  • SOP: Can increase your salary by up to 11%.
  • Clinical Trial: Can increase your salary by up to 10%.
Skill Salary Salary % Increase
UAT
 $118,572
21%
SOP
 $108,772
11%
Clinical Trial
 $107,792
10%
Team Management
 $106,812
9%
Innovation
 $105,832
8%
Project Management
 $105,832
8%
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Intermediate Clinical Programmer Salary by Company Size: Startups vs. Enterprise

Intermediate Clinical Programmer salary potential scales significantly with company size. Data shows that Enterprise companies (5,000+ employees) pay the highest average salary at around $110,069. While startup companies pay approximate $93,397.

Intermediate Clinical Programmer Salary by Company Size

Company Size Employees Average Salary
Startup1~50$93,397
Growth Stage51~500$98,695
Established501~5000$106,375
Enterprise5000+$110,069

Intermediate Clinical Programmer Salary by Industry: Top Paying Sectors

For Intermediate Clinical Programmer roles, the industry you choose can affect earning potential by as much as 50% (the gap between the highest and lowest paying industries). Data shows that the Biotechnology and Healthcare sectors offer the strongest compensation, at 25% above the average. In contrast, Intermediate Clinical Programmer positions in Edu., Gov't. & Nonprofit or MFG Nondurable typically offer lower base pay, as these industries often view Intermediate Clinical Programmer as a support function rather than a direct revenue driver.

The top paying industries for an Intermediate Clinical Programmer

Industry Sector Average Annual Salary Average Hourly Rate Pay vs.Avg
Biotechnology$122,491$59.025%
Healthcare$112,692$54.015%

How Education impacts an Intermediate Clinical Programmer's Salary?

Your level of education can impact your salary potential. While many Intermediate Clinical Programmers enter the field with a Associate's Degree degree, higher education can lead to more specialized and higher-paying roles.

According to our 100% employer-reported salary data, the median salary for an Intermediate Clinical Programmer with a Associate's Degree is between $83,860 and $88,868).

Intermediate Clinical Programmer Salaries by Degree Level

Typical Education for Intermediate Clinical Programmer
Degree Level % of user with this level of education
No Diploma 2.9%
High School 31.4%
Associates 2.9%
Bachelors 31.4%
Masters 60.0%
Doctorate 5.7%
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Intermediate Clinical Programmer Salary: Hourly Rate, Weekly Pay, and Monthly Pay

Understanding how an Intermediate Clinical Programmer's annual salary breaks down can help with budgeting. Below, you can see the average hourly rate, weekly pay, and monthly pay for this role. Use the buttons to switch between different pay periods.

  • Hourly
  • Monthly
  • Weekly
  • Yearly
  • Table View
Last Updated on July 01, 2026
$88,843
Average $97,993/year
$106,173
$7,404
Average $8,166/month
$8,848
$1,709
Average $1,884/week
$2,042
$43
Average $47/hour
$51
Annual Salary Monthly Pay Weekly Pay Hourly Wage
75th Percentile $106,173 $8,848 $2,042 $51
Average $97,993 $8,166 $1,884 $47
25th Percentile $88,843 $7,404 $1,709 $43

Intermediate Clinical Programmer Salary Growth & Career Path

Intermediate Clinical Programmer
Cerner Certified Application Analyst Senior
Bioinformatics Programmer/Analyst III
Bioinformatics Programmer/Analyst IV

Promotions are the fastest way to increase your earnings. As an Intermediate Clinical Programmer, you have the following paths for advancement. The table below compares the salary raises for common next-step roles. By comparing these figures, you can choose the career path that best meets your financial goals.

Intermediate Clinical Programmer Salary Growth and Career Path
Next Step Role Estimate Salary Projected Raise
Cerner Certified Application Analyst Senior $120,600 23%
Bioinformatics Programmer/Analyst III $107,800 10%

Salaries of jobs related to Intermediate Clinical Programmer

Salary Trends for Intermediate Clinical Programmer

Salaries for an Intermediate Clinical Programmer can change over time, reflecting shifts in market demand and the overall economy. The median salary decreased from $86,047 in 2023 to around $85,658 in 2025, reflecting changes in demand, location, experience, and the wider economy. For a detailed analysis of Intermediate Clinical Programmer salary trends, .

Average Annual Salary of Intermediate Clinical Programmer Over Time

2022
$???
2023
$86,047
2024
$86,257
2025
$85,658
2026
$???
2027
$???
Year Average Annual Salary
2022
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2023 $86,047
2024 $86,257
2025 $85,658
2026
View More
2027
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Most common benefits for Intermediate Clinical Programmer

Social Security
401(k)
Disability
Healthcare
Pension
Time Off (days)
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Common company salaries for Intermediate Clinical Programmer

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Where Does Our Salary Data Come From?

Salary.com provides salary estimates, histograms, trends, and comparisons using data from employer job postings and third-party sources.

We offer detailed salary information across multiple percentiles for your reference. (Click here to learn Why the Salary Midpoint Formula Is Crucial for Achieving Pay Equity.)

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