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As of August 01, 2026, the average salary for a Bioinformatics Software Engineer in California is $110,838 per year, which breaks down to an hourly rate of $53.
However, a Bioinformatics Software Engineer's salary can vary significantly. Here’s a look at the typical salary range:
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Bioinformatics Software Engineer Salaries by Percentile
| Annual Salary |
Monthly Pay |
Weekly Pay |
Hourly Wage |
|
| 75th Percentile | $121,384 | $10,115 | $2,334 | $58 |
| Average | $110,838 | $9,237 | $2,132 | $53 |
| 25th Percentile | $100,746 | $8,395 | $1,937 | $48 |
AccuScan Sciences - San Jose, CA
Mithrl - San Francisco, CA
San Diego Stealth Startup - San Diego, CA
San Diego Stealth Startup - San Diego, CA
A Bioinformatics Software Engineer's salary isn't a fixed number. It's shaped by several important factors. Below, we'll explore how your years of experience, geographic location and company size can directly affect your earning potential.
Your salary can change significantly depending on where you work. States with a higher cost of living and strong industrial sectors often pay more to attract Bioinformatics Software Engineers. For example, consider the average annual salaries in these key locations:
Salaries can also vary between different cities. Major metropolitan areas or cities with a high demand for technicians often offer more competitive pay. Here are a few examples of average annual salaries in different U.S. cities:
For Bioinformatics Software Engineer roles, the industry you choose can impact your earning potential by as much as 50% (the gap between the highest and lowest paying industries). Data shows that the highest-paying industry, Business Services, offers compensation 20% above the average. Conversely, Bioinformatics Software Engineer positions in Healthcare typically offer lower base pay, as this sector often view Bioinformatics Software Engineer as a support function rather than a direct revenue driver.
| Industry Sector | Average Annual Salary | Average Hourly Rate | Pay vs.Avg |
|---|---|---|---|
| Business Services | $133,006 | $64.0 | 20% |
| Edu., Gov't. & Nonprofit | $121,922 | $59.0 | 10% |
Understanding how a Bioinformatics Software Engineer's annual salary breaks down can help with budgeting. Below, you can see the average hourly rate, weekly pay, and monthly pay for this role. Use the buttons to switch between different pay periods.
| Annual Salary | Monthly Pay | Weekly Pay | Hourly Wage | |
|---|---|---|---|---|
| 75th Percentile | $121,384 | $10,115 | $2,334 | $58 |
| Average | $110,838 | $9,237 | $2,132 | $53 |
| 25th Percentile | $100,746 | $8,395 | $1,937 | $48 |
Ready to take the next step in your career? Browse thousands of current Bioinformatics Software Engineer job openings on our job board. Use the search bar below to find your perfect match.
Motion Recruitment
Fremont, CA
Motion Recruitment | Fremont, CA
Software Engineer. Location. Remote (need to be local-ish to Pleasanton, CA). Duration. Contract. Rate. $40 w2. Join a leading enterprise organization supp... more
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Motion Recruitment
Alameda, CA
Motion Recruitment | Alameda, CA
Software Engineer. Location. Remote (need to be local-ish to Pleasanton, CA). Duration. Contract. Rate. $40 w2. Join a leading enterprise organization supp... more
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Motion Recruitment
San Jose, CA
Motion Recruitment | San Jose, CA
Software Engineer. Location. Remote (need to be local-ish to Pleasanton, CA). Duration. Contract. Rate. $40 w2. Join a leading enterprise organization supp... more
6 Days Ago
Motion Recruitment
San Francisco, CA
Motion Recruitment | San Francisco, CA
Software Engineer. Location. Remote (need to be local-ish to Pleasanton, CA). Duration. Contract. Rate. $40 w2. Join a leading enterprise organization supp... more
6 Days Ago
Motion Recruitment
Sunnyvale, CA
Motion Recruitment | Sunnyvale, CA
Software Engineer. Location. Remote (need to be local-ish to Pleasanton, CA). Duration. Contract. Rate. $40 w2. Join a leading enterprise organization supp... more
6 Days Ago
Motion Recruitment
Sonoma, CA
Motion Recruitment | Sonoma, CA
Software Engineer. Location. Remote (need to be local-ish to Pleasanton, CA). Duration. Contract. Rate. $40 w2. Join a leading enterprise organization supp... more
6 Days Ago
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