As of September 01, 2026, the average annual salary for Clinical Application Analyst in Houston, TX is $94,978, equivalent to $46 per hour, $1,827 weekly, or $7,915 monthly. These figures, sourced from Salary.com’s real-time job posting scans, highlight competitive earning potential for Clinical Application Analyst in cities like San Jose, Santa Clara, and San Francisco.

Annually Salaries for Clinical Application Analyst in Houston, TX vary widely, spanning from $77,655 to $107,636. Most professionals fall between the 25th percentile ($85,910) and 75th percentile ($101,604), while top earners (90th percentile) make $107,636 per year. This $15,694 pay gap underscores opportunities for salary growth through certifications, specialized skills like Analysis or Process Analysis, or targeting high-paying regions like District of Columbia or California.

Location and experience significantly influence earnings. For example, Houston Clinical Application Analyst often earn 2.1% lower than national averages. However, Houston currently ranks 360 statewide for Clinical Application Analyst job salary. Professionals are advised to focus on high-growth sectors like Business Services to offset market challenges.

Based on HR-reported data: a national average with a geographic differential
Clinical Application Analyst Salaries by Percentile
Percentile Salary Location Last Updated
10th Percentile Clinical Application Analyst Salary $77,655 Houston, TX September 01, 2026
25th Percentile Clinical Application Analyst Salary $85,910 Houston, TX September 01, 2026
50th Percentile Clinical Application Analyst Salary $94,978 Houston, TX September 01, 2026
75th Percentile Clinical Application Analyst Salary $101,604 Houston, TX September 01, 2026
90th Percentile Clinical Application Analyst Salary $107,636 Houston, TX September 01, 2026
25% $85,910 10% $77,655 90% $107,636 75% $101,604 $94,978 50%(Median) Didn’t find job title? Click
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Check out Clinical Application Analyst jobs in Houston, Texas

Senior Epic Application Analyst

Taphealthcare - Houston, TX

Application Support Analyst

DePelchin Children's Center - Houston, TX

Sr Epic Application Analyst (EPIC ASAP)

HUCKEYE HEALTH SERVICES LLC - Houston, TX

Senior Epic Application Analyst - Willow Ambu

HUCKEYE HEALTH SERVICES LLC - Houston, TX

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Clinical Application Analyst

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Job Openings for Clinical Application Analyst in Houston, TX

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Average Base Salary

Core compensation

 
 
 
85910
101604
94978

Average Total Cash Compensation

Includes base and annual incentives

 
 
 
87534
108440
97270
These charts show the average base salary (core compensation), as well as the average total cash compensation for the job of Clinical Application Analyst in Houston, TX. The base salary for Clinical Application Analyst ranges from $85,910 to $101,604 with the average base salary of $94,978. The total cash compensation, which includes base, and annual incentives, can vary anywhere from $87,534 to $108,440 with the average total cash compensation of $97,270.

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85910
101604

 

About Houston, Texas    Houston is located 165 miles (266 km) east of Austin, 88 miles (142 km) west of the Louisiana border, and 250 miles (400 km) south of Dallas. The city....More

Houston, Texas  area prices were up 2.3% from a year ago

Clinical Application Analyst Salary in popular cities: San AntonioDallasAustin

Skills associated with Clinical Application Analyst: #develop

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