As of August 01, 2026, the average annual salary for Clinical Application Analyst in Minnesota is $97,562, equivalent to $47 per hour, $1,876 weekly, or $8,130 monthly. These figures, sourced from Salary.com’s real-time job posting scans, highlight competitive earning potential for Clinical Application Analyst in cities like San Jose, Santa Clara, and San Francisco.

Annually Salaries for Clinical Application Analyst in Minnesota vary widely, spanning from $79,704 to $110,560. Most professionals fall between the 25th percentile ($88,214) and 75th percentile ($104,366), while top earners (90th percentile) make $110,560 per year. This $16,152 pay gap underscores opportunities for salary growth through certifications, specialized skills like Analysis or Process Analysis, or targeting high-paying regions like District of Columbia or California.

Location and experience significantly influence earnings. For example, Minnesota Clinical Application Analyst often earn 2.3% higher than national averages due to demand from Fortune 59 companies. However, Minnesota currently ranks 12 nationwide for Clinical Application Analyst job salary. Professionals are advised to focus on high-growth sectors like Business Services to offset market challenges.

Based on HR-reported data: a national average with a geographic differential
Clinical Application Analyst Salaries by Percentile
Percentile Salary Location Last Updated
10th Percentile Clinical Application Analyst Salary $79,704 MN August 01, 2026
25th Percentile Clinical Application Analyst Salary $88,214 MN August 01, 2026
50th Percentile Clinical Application Analyst Salary $97,562 MN August 01, 2026
75th Percentile Clinical Application Analyst Salary $104,366 MN August 01, 2026
90th Percentile Clinical Application Analyst Salary $110,560 MN August 01, 2026
25% $88,214 10% $79,704 90% $110,560 75% $104,366 $97,562 50%(Median) Didn’t find job title? Click
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Sr Application Analyst - Remote

Fairview Health Services - Cedar, MN

Clinical Informaticist Analyst

ClinDCast LLC - Saint Paul, MN

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Clinical Application Analyst

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Location Avg. Salary Date Updated
Location Lakeville, MN Avg. Salary $99,710 Date Updated August 01, 2026
Location Minnetonka, MN Avg. Salary $100,887 Date Updated August 01, 2026
Location Ada, MN Avg. Salary $93,720 Date Updated August 01, 2026
Location Adams, MN Avg. Salary $95,581 Date Updated August 01, 2026
Location Adolph, MN Avg. Salary $93,462 Date Updated August 01, 2026
Location Adrian, MN Avg. Salary $91,925 Date Updated August 01, 2026
Location Afton, MN Avg. Salary $99,761 Date Updated August 01, 2026
Location Ah Gwah Ching, MN Avg. Salary $93,817 Date Updated August 01, 2026
Location Aitkin, MN Avg. Salary $93,722 Date Updated August 01, 2026
Location Akeley, MN Avg. Salary $93,774 Date Updated August 01, 2026
Job Openings for Clinical Application Analyst in Minnesota

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