As of July 01, 2026, the average annual salary for Clinical Application Analyst in Minnesota is $97,562, equivalent to $47 per hour, $1,876 weekly, or $8,130 monthly. These figures, sourced from Salary.com’s real-time job posting scans, highlight competitive earning potential for Clinical Application Analyst in cities like San Jose, Santa Clara, and San Francisco.

Annually Salaries for Clinical Application Analyst in Minnesota vary widely, spanning from $79,711 to $110,588. Most professionals fall between the 25th percentile ($88,218) and 75th percentile ($104,380), while top earners (90th percentile) make $110,588 per year. This $16,162 pay gap underscores opportunities for salary growth through certifications, specialized skills like Analysis or Process Analysis, or targeting high-paying regions like District of Columbia or California.

Location and experience significantly influence earnings. For example, Minnesota Clinical Application Analyst often earn 2.3% higher than national averages due to demand from Fortune 59 companies. However, Minnesota currently ranks 12 nationwide for Clinical Application Analyst job salary. Professionals are advised to focus on high-growth sectors like Business Services to offset market challenges.

Based on HR-reported data: a national average with a geographic differential
Clinical Application Analyst Salaries by Percentile
Percentile Salary Location Last Updated
10th Percentile Clinical Application Analyst Salary $79,711 MN July 01, 2026
25th Percentile Clinical Application Analyst Salary $88,218 MN July 01, 2026
50th Percentile Clinical Application Analyst Salary $97,562 MN July 01, 2026
75th Percentile Clinical Application Analyst Salary $104,380 MN July 01, 2026
90th Percentile Clinical Application Analyst Salary $110,588 MN July 01, 2026
25% $88,218 10% $79,711 90% $110,588 75% $104,380 $97,562 50%(Median) Didn’t find job title? Click
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Check out Clinical Application Analyst jobs in Minnesota

Clinical Quality Analyst

United Health Group - Minneapolis, MN

Epic Application Analyst

Ensemble Health Partners - Woodbury, MN

Epic Application Analyst

Ensemble Health Partners - Burnsville, MN

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Clinical Application Analyst

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Location Avg. Salary Date Updated
Location Lakeville, MN Avg. Salary $99,450 Date Updated July 01, 2026
Location Minnetonka, MN Avg. Salary $100,623 Date Updated July 01, 2026
Location Ada, MN Avg. Salary $93,476 Date Updated July 01, 2026
Location Adams, MN Avg. Salary $95,332 Date Updated July 01, 2026
Location Adolph, MN Avg. Salary $93,218 Date Updated July 01, 2026
Location Adrian, MN Avg. Salary $91,684 Date Updated July 01, 2026
Location Afton, MN Avg. Salary $99,501 Date Updated July 01, 2026
Location Ah Gwah Ching, MN Avg. Salary $93,572 Date Updated July 01, 2026
Location Aitkin, MN Avg. Salary $93,477 Date Updated July 01, 2026
Location Akeley, MN Avg. Salary $93,529 Date Updated July 01, 2026
Job Openings for Clinical Application Analyst in Minnesota

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