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EHR Application Analyst II Salary in the United States

How much does an EHR Application Analyst II make in the United States?

As of July 01, 2026, the average salary for an EHR Application Analyst II in the United States is $99,470 per year, which breaks down to an hourly rate of $48.

However, an EHR Application Analyst II's salary can vary significantly. Here’s a look at the typical salary range:

  • Top Earners (90th percentile): $112,748
  • Majority Range (25th-75th percentile): $89,950 to $106,420
  • Entry-Level (10th percentile): $81,283
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View as table View as graph 25% $89,950 10% $81,283 90% $112,748 75% $106,420 $99,470 50%(Median) Didn’t find job title? Click

EHR Application Analyst II Salaries by Percentile

Annual
Salary
Monthly
Pay
Weekly
Pay
Hourly
Wage
75th Percentile $106,420 $8,868 $2,047 $51
Average $99,470 $8,289 $1,913 $48
25th Percentile $89,950 $7,496 $1,730 $43
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Key Factors That Influence EHR Application Analyst II Salaries

An EHR Application Analyst II's salary isn't a fixed number. It's shaped by several important factors. Below, we'll explore how your years of experience, geographic location, and company size can directly affect your earning potential.

How Experience Level Affects EHR Application Analyst Salaries?

Experience is a primary driver of an EHR Application Analyst II's salary. As you build your skills and take on more complex tasks, your compensation generally increases. Here's how the average salary grows at different career stages:

  • Cerner Certified Application Analyst Entry (0-2 years): $84,171
  • EHR Application Analyst II (2-4 years): $99,468
  • Cerner Certified Application Analyst Senior (4-7 years): $120,549
Job Role Years of Experience Average Salary
Cerner Certified Application Analyst Entry0-2 years$84,171
EHR Application Analyst II2-4 years$99,468
Cerner Certified Application Analyst Senior4-7 years$120,549
$84,171 Cerner Ce...
$99,468 EHR Appli...
$120,549 Cerner Ce...
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What Am I Worth?

Top Paying Cities for EHR Application Analyst IIs

Salaries can also vary between different cities. Major metropolitan areas or cities with a high demand for technicians often offer more competitive pay. Here are a few examples of average annual salaries in different U.S. cities:

  • San Jose: $125,460
  • San Francisco: $124,090
  • Oakland: $121,480

What Skills Can Increase an EHR Application Analyst II's Salary?

Demanded Skills for the Role:

  • Analysis (Mentioned in 8.9% Job Postings): Analysis is the process of considering something carefully or using statistical methods in order to understand it or explain it.
  • Process Analysis (Mentioned in 2.37% Job Postings): Process analysis is a form of technical writing and expository writing "designed to convey to the reader how a change takes place through a series of stages". While the traditional process analysis and a set of instructions are both organized chronologically, the reader of a process analysis is typically interested in understanding the chronological components of a system that operates largely without the reader's direct actions (such as how the body digests an apple), while the reader of a set of instructions intends to use the instructions in order to accomplish a specific, limited task (such as how to bake an apple pie). By contrast, the reader of a mechanism description is more interested in an object in space (such as the form and nutritional value of a particular kind of apple).
  • Health Information Technology (Mentioned in 1.78% Job Postings): Health information technology is health technology, particularly information technology, applied to health and health care
See More Skills
Skills Demand Percentage
Analysis 8.9%
Process Analysis 2.37%
Health Information Technology 1.78%
What skills can make your compensation higher?
Mastering certain specialized skills can lead to a significant increase in pay. Here are examples of skills and the potential impact they can have on an EHR Application Analyst II's salary.
  • Integrated Care: Can increase your salary by up to 18%.
  • Ambulatory Care: Can increase your salary by up to 12%.
  • Taking Ownership: Can increase your salary by up to 12%.
Skill Salary Salary % Increase
Integrated Care
$117,375
18%
Ambulatory Care
$111,406
12%
Taking Ownership
$111,406
12%
Use Cases
$110,412
11%
Visio
$109,417
10%
System Testing
$108,422
9%
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EHR Application Analyst II Salary by Company Size: Startups vs. Enterprise

EHR Application Analyst II salary potential scales significantly with company size. Data shows that Enterprise companies (5,000+ employees) pay the highest average salary at around $106,196. While startup companies pay approximate $90,291.

EHR Application Analyst II Salary by Company Size

Company Size Employees Average Salary
Startup1~50$90,291
Growth Stage51~500$95,371
Established501~5000$102,684
Enterprise5000+$106,196

EHR Application Analyst II Salary by Industry: Top Paying Sectors

For EHR Application Analyst II roles, the industry you choose can impact your earning potential by as much as 40% (the gap between the highest and lowest paying industries). Data shows that the highest-paying industry, Business Services, offers compensation 20% above the average. Conversely, EHR Application Analyst positions in Edu., Gov't. & Nonprofit typically offer lower base pay, as this sector often view EHR Application Analyst II as a support function rather than a direct revenue driver.

The top paying industry for an EHR Application Analyst II

Industry Sector Average Annual Salary Average Hourly Rate Pay vs.Avg
Business Services$119,364$57.020%

EHR Application Analyst II Salary: Hourly Rate, Weekly Pay, and Monthly Pay

Understanding how an EHR Application Analyst II's annual salary breaks down can help with budgeting. Below, you can see the average hourly rate, weekly pay, and monthly pay for this role. Use the buttons to switch between different pay periods.

Last Updated on July 01, 2026

EHR Application Analyst II Salary Growth & Career Path

Promotions are the fastest way to increase your earnings. As an EHR Application Analyst II, you have the following paths for advancement. The table below compares the salary raises for common next-step roles. By comparing these figures, you can choose the career path that best meets your financial goals.

EHR Application Analyst II Salary Growth and Career Path
Next Step Role Estimate Salary Projected Raise
Cerner Certified Application Analyst Senior $120,600 21%
Bioinformatics Programmer/Analyst III $107,800 8%

Salary Trends for EHR Application Analyst II

Salaries for an EHR Application Analyst II can change over time, reflecting shifts in market demand and the overall economy. The median salary decreased from $87,170 in 2023 to around $86,419 in 2025, reflecting changes in demand, location, experience, and the wider economy. For a detailed analysis of EHR Application Analyst II salary trends, .

Average Annual Salary of EHR Application Analyst II Over Time

2022
$???
2023
$87,170
2024
$86,912
2025
$86,419
2026
$???
2027
$???
Year Average Annual Salary
2022
View More
2023 $87,170
2024 $86,912
2025 $86,419
2026
View More
2027
View More

Most common benefits for EHR Application Analyst II

Social Security
401(k)
Disability
Healthcare
Pension
Time Off (days)
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Common company salaries for EHR Application Analyst II

Here are companies hiring for EHR Application Analyst II and their salaries, click below for more details.

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FAQ about EHR Application Analyst II

1. What industry pays the highest salary for EHR Application Analyst II?

The Business Services industry offers the highest average compensation for EHR Application Analyst II roles, with salaries approximately 20% above the market median.

2. How much does a health data analyst earn in USA?

The salary for an EHR Application Analyst in the USA ranges from $86,960 to $109,750, with a median salary of $97,590. These figures reflect the typical earnings for this role, providing a clear picture of compensation in the healthcare data analysis field.

3. What does an EHR application analyst do?

An EHR application analyst is responsible for planning, studying, developing, and implementing electronic health records systems. They often collaborate with clinical service providers and administrators to make decisions, solve problems, and test system efficacy. Salaries for this role typically range from $86,960 to $109,750, with a median salary of $97,590.

4. Is health informatics a good career in the USA?

Health Informatics is a promising career in the USA, especially for international students. With the healthcare sector increasingly relying on data-driven decision-making, professionals in this field are in high demand. Salaries for EHR Application Analysts range from $86,960 to $109,750, reflecting the competitive nature and growth potential in this industry.

5. How much does a health informatics data analyst earn in USA?

As of January 8, 2025, the salary for a Health Informatics Data Analyst in the United States ranges from $86,960 to $109,750 annually, with a median salary of $97,590. This translates to approximately $41.76 to $52.73 per hour, or $1,673 to $2,115 per week.

6. What does an epic EHR analyst do?

An Epic EHR Analyst plays a crucial role in healthcare IT by collaborating with clinicians, administrators, and IT teams. They gather requirements, analyze workflows, design solutions, and ensure effective system utilization. The salary for this position ranges from $86,960 to $109,750, with a midpoint of $97,590, reflecting the analyst's expertise and responsibilities.

7. What is a Level 2 analyst job description?

A Level 2 EHR Application Analyst is responsible for gathering and analyzing customer issues to determine their causes. They contribute to customer knowledge for improved future support and ensure prompt resolution of issues while meeting SLA requirements. The salary for this position ranges from $86,960 to $109,750, with a midpoint of $97,590.

Where Does Our Salary Data Come From?

Salary.com provides salary estimates, histograms, trends, and comparisons using data from employer job postings and third-party sources.

We offer detailed salary information across multiple percentiles for your reference. (Click here to learn Why the Salary Midpoint Formula Is Crucial for Achieving Pay Equity.)

With the most extensive online, real-time compensation data available, Salary.com helps you pinpoint your exact pay target.

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